Applied
Environmental
Experimental
Genomics

Environmental Biotechnology

Slides

Lesson 1
Lesson 2
Lesson 3-4 FISH
Lesson 5
Lesson 6
Lesson 7
Lesson 8
Lesson 9
Lesson 10
Lesson 11

Articles

Lesson 1 Blaser et al., 2016
Lesson 1 Brock
Lesson 1 Peixoto 2022 Ex
Lesson 2 Brock
Lesson 2 Crisan & Goldberg 2025 Ex
Lesson 2 Drake 2025 Ex
Lesson 2 Flemming et al., 2016
Lesson 2 One health 2022
Lesson 3+4 Book
Lesson 3+4 FISH Overview
Lesson 3+4 FISH Slide
Lesson 7 Brock
Lesson 7 Nielsen 2017
Lesson 7 Nierychlo at al 2020 Ex
Lesson 8 Brock
Lesson 8 Kuenen 2019
Lesson 8 note about EBPR
Lesson 8 Valk at al 2022 Ex
Lesson 9 Berg 2020
Lesson 9 Plant Diet
Lesson 9 Silva 2020
Lesson 11 Brock
Lesson 11 Lange 2022 bioeconomy
Lesson 11 Lowley 2006 Ex
Lesson 11 Paul et al. 2021 biopolymers
Lesson 12 - Falås 2012 (not mandatory)

Recordings

Day 1 part 1 intro
Day 1 part 2 intro
Day 2 part 1 biofilm & ARGs
Day 2 part 2 biofilm & ARGs
Day 3+4 part 1 FISH
Day 3+4 part 2 FISH
Day 3+4 part 3 microscopy (not on the exam)
Day 3+4 part 4 microscopy (not on the exam)
Day 3+4 part 5 microscopy (not on the exam)
Day 5 part 1 microbial community analysis using 16S rRNA
Day 5 part 2 microbial community analysis using 16S rRNA
Day 6 microbial community analysis using 16S rRNA
Day 7 part 1 communities - MiDAS
Day 7 part 2 communities - MiDAS
Day 7 part 3 communities - MiDAS
Day 8 part 1 C,N,P, Anammox
Day 8 part 2 C,N,P, Anammox
Day 9 part 1 Gut microbiome
Day 9 part 2 Gut microbiome
Day 9 part 3 Gut microbiome
Day 10 exercise 1 biorefinery, anaerobic digestion, biopolymer
Day 10 part 1 biorefinery, anaerobic digestion, biopolymer
Day 10 part 2 biorefinery, anaerobic digestion, biopolymer
Day 10 part 3 biorefinery, anaerobic digestion, biopolymer
Day 10 part 4 biorefinery, anaerobic digestion, biopolymer
Day 10 part 5 (nee) biorefinery, anaerobic digestion, biopolymer
Day 11 part 1 micropollutant
Day 11 part 1 (nee) micropollutant
Day 11 part 2 micropollutant
Day 11 part 3 micropollutant
Day 11 part 4 micropollutant 6. dec