Lecture 1 Video 1 Fluorescence Summary

Protein structure

🌟 What Is Fluorescence?

Fluorescence is a type of luminescence, meaning light emission that does not come from heat. Instead, it comes from how molecules interact with light at the electronic level.

Historically:

  • In 1845, Frederick William Herschel observed a blue glow from quinine when illuminated with light.
  • Later, Georg Gabriel Stokes discovered that once light had passed through one quinine solution, it could no longer make another glow.
  • This led to the realization that light carries discrete packets of energy that can be β€œused up” β€” a key idea later explained by quantum mechanics.

βš›οΈ Molecular Orbitals Refresher (Organic Chemistry Core)

Molecules contain electrons in molecular orbitals, arranged by energy:

  • Low-energy orbitals: Οƒ (sigma)
  • Higher-energy orbitals: Ο€ (pi)
  • Antibonding orbitals: Οƒ*, Ο€*
  • Non-bonding orbitals: sometimes in between

Key terms:

  • HOMO β†’ Highest Occupied Molecular Orbital
  • LUMO β†’ Lowest Unoccupied Molecular Orbital

Electrons always fill the lowest energy orbitals first.


🌈 How Light Interacts with Molecules

Light is electromagnetic radiation, often written as:

E = h u

Where:

  • E = energy
  • h = Planck’s constant
  • Ξ½ = frequency

If light has exactly the right energy, it can:

  • Be absorbed
  • Promote an electron from HOMO β†’ LUMO

This creates an excited electronic state.


⏱️ Excited States and Energy Release

An excited molecule is unstable and must relax back to equilibrium.

Two possible outcomes:

  1. Emission of light β†’ fluorescence ✨
  2. Release of heat β†’ no light (non-radiative decay)

Only molecules where light emission competes successfully with heat loss are fluorescent molecules.


πŸ§ͺ Example: Quinine (Tonic Water Glow)

Observations:

  • Absorbs UV light (~300–350 nm)
  • Emits blue light (~440–490 nm)
  • Quinine solutions appear colorless in visible light

⚠️ This raises a puzzle:

If absorbed and emitted light involve the same electron transition, why are the wavelengths different?


πŸ”„ The Stokes Shift

The difference between:

  • Absorption wavelength
  • Emission wavelength

is called the Stokes shift.

Since energy must be conserved, this means some energy is lost before emission β€” but where?


πŸ“Š Absorption vs Emission Spectra (Perylene Example)

Key features:

  • Multiple absorption peaks
  • Multiple emission peaks

This cannot be explained by electronic states alone.


πŸ“ Jablonski Diagram: The Full Picture

A Jablonski diagram (named after a Polish physicist) shows:

  • Electronic states:
    • Ground state (Sβ‚€)
    • First excited state (S₁)
  • Vibrational sub-levels within each electronic state

⚠️ Energy increases upwards, even if the axis is not drawn.


πŸ”§ Vibrational States: The Missing Piece

Important insight:

  • Electronic excitation happens in femtoseconds
  • Atoms cannot move that fast

So:

  • An electron is promoted
  • Bond strength changes
  • But bond length cannot adjust instantly

This creates vibrational excitation.

Key consequences:

  • Excitation goes to excited electronic + excited vibrational states
  • Vibrational energy spacings are much smaller than electronic ones

⚑ Relaxation Pathways (Rates Matter!)

Relaxation happens in this order:

  1. Vibrational relaxation (very fast)
    • Energy lost as heat to the surroundings
  2. Electronic relaxation
    • Can emit light (fluorescence)

➑️ Result:

  • Emission always comes from the lowest vibrational level of the excited state
  • Emitted light has lower energy (longer wavelength) than absorbed light

βœ”οΈ This explains the Stokes shift


🎢 Why Spectra Have Multiple Peaks

  • Absorption excites different vibrational levels
  • Emission can end in different vibrational levels of the ground state

This creates:

  • Multiple absorption peaks
  • Multiple emission peaks

🚫 Why Some Molecules Do NOT Fluoresce

Some molecules lose energy by:

  • Radiationless transitions (heat only)

Shown in diagrams as wavy arrows.

Fluorescence depends on competition between rates:

  • Radiative (light-emitting) vs non-radiative (heat)

Rules of thumb:

  • Similar rates β†’ weak fluorescence
  • Faster radiative rate β†’ high fluorescence yield

🧠 Big Picture Summary

βœ” Fluorescence is quantum-mechanical βœ” Light excites electrons (HOMO β†’ LUMO) βœ” Vibrational relaxation causes energy loss βœ” Emitted light has lower energy (Stokes shift) βœ” Fluorescence depends on relative rate constants

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